MARA results: cerebellum, embryo E15, biol

Sample name: cerebellum, embryo E15, biol_rep3 (E15R3)

Sorted Z-values histogram for the sample cerebellum, embryo E15, biol_rep3 (E15R3)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UGUGCUU	5.513
RFX1..5_RFXANK_RFXAP.p2	5.230	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
MAFB.p2	4.232	Mafb
REST.p3	4.227	Rest
ZFP161.p2	3.675	Zfp161
KLF12.p2	2.996	Klf12
HOX{A6,A7,B6,B7}.p2	2.896	Hoxb6 Hoxa7 Hoxb7 Hoxa6
SNAI1..3.p2	2.700	Snai2 Snai1 Snai3
NFIX.p2	2.460	Nfix
GTF2I.p2	2.409	Gtf2i
UUGGCAC	2.389
EVI1.p2	2.331	Mecom
ZBTB6.p2	2.274	Zbtb6
AHR_ARNT_ARNT2.p2	2.213	Arnt Ahr Arnt2
HIC1.p2	2.153	Hic1
NRF1.p2	2.113	Nrf1
POU5F1.p2	2.095	Pou5f1
CTCF.p2	2.075	Ctcf
SOX17.p2	2.064	Sox17
SOX2.p2	2.042	Sox2
NKX3-1.p2	1.736	Nkx3-1
SPZ1.p2	1.729	Spz1
EWSR1-FLI1.p2	1.709	Fli1 Ewsr1
MZF1.p2	1.673	Mzf1
GLI1..3.p2	1.651	Gli1 Gli2 Gli3
AUUGCAC	1.623
ZEB1.p2	1.614	Zeb1
CAGCAGG	1.608
AGCAGCA	1.549
MYFfamily.p2	1.506	Myod1 Myf6 Myf5 Myog
LMO2.p2	1.502	Lmo2
ZNF423.p2	1.497	Zfp423
TGIF1.p2	1.453	Tgif1
GCUGGUG	1.446
ACCCUGU	1.384
AAAGUGC	1.344
PAX2.p2	1.342	Pax2
ZBTB16.p2	1.291	Zbtb16
HOX{A4,D4}.p2	1.255	Hoxa4 Hoxd4
SMAD1..7,9.p2	1.254	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
GCAGCAU	1.219
DMAP1_NCOR{1,2}_SMARC.p2	1.180	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
RREB1.p2	1.152	Rreb1
ETS1,2.p2	1.141	Ets2 Ets1
AACACUG	1.123
GATA1..3.p2	1.058	Gata1 Gata2 Gata3
TCF4_dimer.p2	1.057	Tcf4
TBX4,5.p2	1.034	Tbx5 Tbx4
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	1.032	Arnt Max Myc Usf1 Bhlhe40 Arnt2
ACAUUCA	1.017
ATF2.p2	1.005	Atf2
ACAGUAC	0.992
NFE2.p2	0.965	Nfe2
POU6F1.p2	0.935	Pou6f1
GAUUGUC	0.935
AGCAGCG	0.914
SPIB.p2	0.887	Spib
GFI1B.p2	0.877	Gfi1b
ZNF143.p2	0.870	Zfp143
UUGGCAA	0.861
UGCAUAG	0.807
AAUACUG	0.787
HBP1_HMGB_SSRP1_UBTF.p2	0.780	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
MAZ.p2	0.768	Maz
CUCCCAA	0.752
GUGCAAA	0.740
KLF4.p3	0.734	Klf4
TFAP2B.p2	0.720	Tcfap2b
NKX2-1,4.p2	0.696	Nkx2-1 Nkx2-4
HOX{A5,B5}.p2	0.685	Hoxb5 Hoxa5
SOX{8,9,10}.p2	0.680	Sox9 Sox8 Sox10
GGAAGAC	0.670
NKX3-2.p2	0.663	Nkx3-2
UAAGACG	0.639
UAAGACU	0.625
UGCAUUG	0.601
ESRRA.p2	0.595	Esrra
ZNF384.p2	0.575	Zfp384
FOXQ1.p2	0.572	Foxq1
EGR1..3.p2	0.572	Egr3 Egr1 Egr2
ATF6.p2	0.554	Atf6
GZF1.p2	0.542	Gzf1
FOXN1.p2	0.540	Foxn1
EOMES.p2	0.536	Eomes
SRY.p2	0.515	Sry
UUGUUCG	0.477
CDX1,2,4.p2	0.463	Cdx1 Cdx2 Cdx4
AGCACCA	0.425
GGCUCAG	0.425
FOX{I1,J2}.p2	0.414	Foxi1 Foxj2
RXRA_VDR{dimer}.p2	0.384	Vdr	$logo of RXRA_VDR{dimer}.p2$
UUUUUGC	0.373
SREBF1,2.p2	0.370	Srebf1 Srebf2
T.p2	0.363	T
ALX1.p2	0.359	Alx1
NR6A1.p2	0.353	Nr6a1
UCACAUU	0.349
RXR{A,B,G}.p2	0.341	Rxra Rxrb Rxrg
GAGAACU	0.334
PATZ1.p2	0.334	Patz1
AUGGCAC	0.328
CGUGUCU	0.324
RUNX1..3.p2	0.321	Runx1 Runx3 Runx2
GAGGUAG	0.319
ACUGGCC	0.311
FOX{D1,D2}.p2	0.292	Foxd2 Foxd1
EN1,2.p2	0.291	En1 En2
MTF1.p2	0.279	Mtf1
GGACGGA	0.274
AAGUGCU	0.269
GUAAACA	0.262
ZIC1..3.p2	0.251	Zic1 Zic2 Zic3
ESR1.p2	0.243	Esr1
NFE2L2.p2	0.241	Nfe2l2
ARID5B.p2	0.239	Arid5b
UCCCUUU	0.227
LHX3,4.p2	0.211	Lhx3 Lhx4
GAUAUGU	0.187
STAT1,3.p3	0.183	Stat1 Stat3
AUGACAC	0.175
MSX1,2.p2	0.151	Msx1 Msx2
HMX1.p2	0.126	Hmx1
EP300.p2	0.123	Ep300
CRX.p2	0.115	Crx
LEF1_TCF7_TCF7L1,2.p2	0.114	Tcf7 Tcf7l2 Lef1 Tcf7l1
IKZF2.p2	0.102	Ikzf2
CCAGUGU	0.092
NFE2L1.p2	0.087	Nfe2l1
HMGA1,2.p2	0.076	Hmga1 Hmga2
CUACAGU	0.070
BACH2.p2	0.052	Bach2
GGCAGUG	0.045
PRRX1,2.p2	0.027	Prrx2 Prrx1
CGUACCG	0.020
AACGGAA	0.018
AAUCUCA	0.017
DBP.p2	0.017	Dbp
BPTF.p2	0.017	Bptf
PAX8.p2	0.009	Pax8
ACCCGUA	-0.003
UGAAAUG	-0.007
JUN.p2	-0.008	Jun Jund Junb
HOXA9_MEIS1.p2	-0.013	Meis1 Hoxa9
CDC5L.p2	-0.019	Cdc5l
AACAGUC	-0.027
CAGUGCA	-0.027
PAX3,7.p2	-0.037	Pax7 Pax3
AACCGUU	-0.039
GAUCAGA	-0.043
FOXL1.p2	-0.069	Foxl1
CEBPA,B_DDIT3.p2	-0.070	Ddit3 Cebpa Cebpb
TAL1_TCF{3,4,12}.p2	-0.080	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
EHF.p2	-0.088	Ehf
UGUGCGU	-0.099
AAGGUGC	-0.113
FEV.p2	-0.116	Fev
NHLH1,2.p2	-0.119	Nhlh1 Nhlh2
ZNF238.p2	-0.127	Zfp238
HSF1,2.p2	-0.132	Hsf1 Hsf2
AR.p2	-0.136	Ar
FOXP3.p2	-0.141	Foxp3
GGAGUGU	-0.141
PDX1.p2	-0.142	Pdx1
CCUUCAU	-0.147
AAUCUCU	-0.147
AIRE.p2	-0.148	Aire
NKX2-2,8.p2	-0.173	Nkx2-2 Nkx2-9
UAUUGCU	-0.176
UGACCUA	-0.182
GCUACAU	-0.195
STAT5{A,B}.p2	-0.203	Stat5b Stat5a
POU3F1..4.p2	-0.216	Pou3f1 Pou3f3 Pou3f2 Pou3f4
AUGGCUU	-0.218
POU1F1.p2	-0.218	Pou1f1
ADNP_IRX_SIX_ZHX.p2	-0.244	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
SP1.p2	-0.246	Sp1
UCACAGU	-0.246
NFATC1..3.p2	-0.248	Nfatc3 Nfatc2 Nfatc1
PPARG.p2	-0.257	Pparg
FOSL2.p2	-0.259	Fosl2
CCAGCAU	-0.272
ATF5_CREB3.p2	-0.285	Atf5 Creb3
AACCUGG	-0.295
PAX6.p2	-0.307	Pax6
RORA.p2	-0.307	Rora
UUGGUCC	-0.323
FOX{C1,C2}.p2	-0.338	Foxc1 Foxc2
GUCAGUU	-0.338
GGCAAGA	-0.349
ACUGCAU	-0.359
HNF1A.p2	-0.365	Hnf1a
AGGUAGU	-0.366
AAUGCCC	-0.385
GGAAUGU	-0.409
FOXO1,3,4.p2	-0.433	Foxo1 Foxo4 Foxo3
VSX1,2.p2	-0.439	Vsx2 Vsx1
GAGAUGA	-0.450
NANOG.p2	-0.463	Nanog
CACAGUG	-0.473
SPI1.p2	-0.479	Sfpi1
RXRG_dimer.p3	-0.514	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
PAX4.p2	-0.549	Pax4
FOXD3.p2	-0.553	Foxd3
POU5F1_SOX2{dimer}.p2	-0.562	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
HES1.p2	-0.563	Hes1
HAND1,2.p2	-0.578	Hand1 Hand2
GTF2A1,2.p2	-0.580	Gtf2a1 Gtf2a2
AGCUGCC	-0.583
TFAP2{A,C}.p2	-0.586	Tcfap2c Tcfap2a
RBPJ.p2	-0.601	Rbpj
HLF.p2	-0.608	Hlf
NKX6-1,2.p2	-0.641	Nkx6-1 Nkx6-2
SOX5.p2	-0.657	Sox5
MYOD1.p2	-0.686	Myod1
UCCAGUU	-0.742
CUX2.p2	-0.748	Cux2
FOX{F1,F2,J1}.p2	-0.755	Foxf2 Foxj1 Foxf1a
IKZF1.p2	-0.755	Ikzf1
AGUGCAA	-0.765
AGUGGUU	-0.800
AGCUUAU	-0.816
EBF1.p2	-0.818	Ebf1
NR3C1.p2	-0.823	Nr3c1
NANOG{mouse}.p2	-0.837	Nanog
SRF.p3	-0.840	Srf
MYBL2.p2	-0.851	Mybl2
ONECUT1,2.p2	-0.905	Onecut2 Onecut1
UCAAGUA	-0.920
ELK1,4_GABP{A,B1}.p3	-0.960	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
TP53.p2	-0.966	Trp53
TFAP4.p2	-0.969	Tcfap4
GUAACAG	-0.973
GATA6.p2	-0.995	Gata6
CUUUGGU	-1.010
TFEB.p2	-1.077	Tcfeb
TFDP1.p2	-1.119	Tfdp1
PRDM1.p3	-1.178	Prdm1
UAAUGCU	-1.193
XBP1.p3	-1.220	Xbp1
ATF4.p2	-1.240	Atf4
CREB1.p2	-1.274	Creb1
TFCP2.p2	-1.361	Tcfcp2
GUAGUGU	-1.385
NR5A1,2.p2	-1.474	Nr5a1 Nr5a2
NFKB1_REL_RELA.p2	-1.488	Rela Rel Nfkb1
ACAGUAU	-1.491
PBX1.p2	-1.544	Pbx1
bHLH_family.p2	-1.550	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
FOS_FOS{B,L1}_JUN{B,D}.p2	-1.665	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HNF4A_NR2F1,2.p2	-1.695	Nr2f1 Nr2f2 Hnf4a
HIF1A.p2	-1.799	Hif1a
FOXA2.p3	-1.802	Foxa2
POU2F1..3.p2	-1.821	Pou2f2 Pou2f1 Pou2f3
ZNF148.p2	-1.830	Zfp148
STAT2,4,6.p2	-1.883	Stat2 Stat4 Stat6
TLX1..3_NFIC{dimer}.p2	-1.891	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
TBP.p2	-1.894	Tbp
TLX2.p2	-1.934	Tlx2
MEF2{A,B,C,D}.p2	-1.935	Mef2a Mef2c Mef2d Mef2b
PITX1..3.p2	-1.954	Pitx2 Pitx3 Pitx1
NKX2-3_NKX2-5.p2	-2.013	Nkx2-5 Nkx2-3
NR1H4.p2	-2.151	Nr1h4
IRF1,2,7.p3	-2.245	Irf1 Irf2 Irf7
NFIL3.p2	-2.256	Nfil3
MYB.p2	-2.288	Myb
PAX5.p2	-2.294	Pax5
GFI1.p2	-2.413	Gfi1
CCCUGAG	-2.494
YY1.p2	-2.662	Yy1
AAGGCAC	-3.044
ELF1,2,4.p2	-3.478	Elf2 Elf1 Elf4
TEAD1.p2	-3.664	Tead1 Tead2 Tead3 Tead4
E2F1..5.p2	-6.331	E2f4 E2f5 E2f2 E2f1 E2f3
NFY{A,B,C}.p2	-6.375	Nfyc Nfyb Nfya

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Sample name: cerebellum, embryo E15, biol_rep3 (E15R3)

Sorted z-values for every WM.